SNP Profiles of IMC 54 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	CG	TT	CC	TT	GT	CT	AT	GG	CT	AA	TT	TT	GG
1._RUQ_11	_	CG	_	_	_	TT	_	_	GG	_	AA	_	_	_
2._RUQ_11	AG	CG	_	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
3._RUQ_11	AG	CG	TT	_	_	TT	_	_	_	CT	AA	_	_	_
4._IMC_54	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
5._IMC_54	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
6._IMC_54	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
7._IMC_54	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
8._IMC_54	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
9._GC-04-018-1-18	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
10._GC-04-018-1-18	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
11._GC-04-018-1-18	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
12._GC-04-018-1-18	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
13._GC-04-018-1-18	AG	CG	TT	CC	TT	TT	CC	AA	GG	CT	AA	TT	AT	GG
14._GC-04-18-1-18	AG	CG	AA	CC	AA	AA	_	AA	GG	AG	AA	AA	AT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	CT	CC	GT	AA	CC	AC	GG	GG	CC	CC	AA	AG	AT
1._RUQ_11	_	_	CC	GG	AA	_	AA	GG	_	_	CC	_	_	_
2._RUQ_11	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	AG	AA
3._RUQ_11	_	TT	CC	GG	_	CC	AA	GG	GT	CT	CC	AA	_	AA
4._IMC_54	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
5._IMC_54	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
6._IMC_54	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
7._IMC_54	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
8._IMC_54	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
9._GC-04-018-1-18	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
10._GC-04-018-1-18	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
11._GC-04-018-1-18	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
12._GC-04-018-1-18	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
13._GC-04-018-1-18	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA	GG	AA
14._GC-04-18-1-18	GG	AG	GG	CC	_	GG	AA	GG	AC	_	CC	_	GG	AA

	29	30	31	32	33	34	35
_Input profile	CT	GG	AC	GT	CC	AT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_11	_	AG	_	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_11	CT	AG	AC	GT	_	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_11	TT	AG	AC	GT	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._IMC_54	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._IMC_54	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._IMC_54	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._IMC_54	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._IMC_54	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-018-1-18	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-018-1-18	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-018-1-18	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-018-1-18	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-04-018-1-18	TT	AG	AA	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-04-18-1-18	AA	AG	AC	AC	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_54

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D311

Dapeng Zhang, 2016

1._IMC_54 RUQ_11

83.3 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._IMC_54 RUQ_11

78.8 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._IMC_54 RUQ_11

77.3 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._IMC_54

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

5._IMC_54

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

6._IMC_54

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

7._IMC_54

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

8._IMC_54

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._IMC_54 GC-04-018-1-18

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

10._IMC_54 GC-04-018-1-18

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

11._IMC_54 GC-04-018-1-18

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

12._IMC_54 GC-04-018-1-18

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

13._IMC_54 GC-04-018-1-18

75.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._IMC_54 GC-04-18-1-18

43.5 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1350	5	TcSNP1270
6	TcSNP1253	7	TcSNP1165	8	TcSNP1075	9	TcSNP1062	10	TcSNP1060
11	TcSNP998	12	TcSNP994	13	TcSNP953	14	TcSNP929	15	TcSNP917
16	TcSNP891	17	TcSNP872	18	TcSNP723	19	TcSNP645	20	TcSNP619
21	TcSNP591	22	TcSNP577	23	TcSNP560	24	TcSNP534	25	TcSNP529
26	TcSNP469	27	TcSNP429	28	TcSNP372	29	TcSNP242	30	TcSNP230
31	TcSNP193	32	TcSNP150	33	TcSNP144	34	TcSNP32	35	TcSNP25